Single Promoter Downstream Gene FAIRE cell cycle data 0' 18' 36' 54' 63' 72' 90' 0' - Max(18'-90') Expression (Spellman et al.) 0' 7' 14' 21' 28' 35' 42' 49' 56' 63' 70' 77' 84' 91' Binding p-value (Harbison et al.) STE12_Alpha DIG1_Alpha MCM1_Alpha STE12_YPD DIG1_YPD MCM1_YPD Mating specific gene? (Zeitlinger et al.) IYNR043W YNR044W 3.179576912 0.356342283 -0.324652994 -0.639281018 -0.709038863 -1.161976752 -0.073781722 2.823234629 4.44 3.07 1.8 -0.63 -0.71 -1.24 -0.82 -1.35 -1.26 -0.99 -0.48 -0.12 -0.25 Missing 0.000418037 0.10411198 0.00202269 0.000242207 0.15630237 0.001565163 Yes IYDR249C YDR249C 3.513524472 0.716635438 0.257165742 0.875870142 0.599605837 0.717127612 0.794141074 2.63765433 1.08 0.1 0.06 -0.14 0.04 -0.31 -0.33 -0.06 0.38 -0.04 0.22 -0.17 Missing -0.34 4.12378E-07 1.61204E-13 0.4938834 0.000492952 0.005510675 0.1249496 No IYJL128C-1 YJL128C 4.019088779 1.434825537 0.707464484 0.729725008 0.887432257 1.196962284 0.403259219 2.584263242 -0.16 0.08 0.16 0.17 0.17 0.03 0.18 -0.11 -0.19 0.05 -0.16 0.28 -0.1 -0.27 1.57493E-08 0 0.054001774 0 0 0.61596549 Missing IYPL192C YPL192C 3.026465994 0.47876674 -0.08633432 -0.028848654 0.291578985 0.178420689 0.138162689 2.547699254 2.89 2.39 1.05 -0.18 -0.36 -0.35 -0.29 -0.33 -0.42 -0.45 -0.69 -0.63 -0.5 -0.76 9.91005E-06 0.33419308 1.24763E-09 0.000827596 0.005135873 0.000394919 Yes IYDR085C YDR085C 3.00879907 0.293004955 0.182902556 0.473310014 0.599528646 0.469228065 -0.161578571 2.409270424 2.17 0.13 0.5 0.28 0.11 -0.32 -0.18 -0.47 -0.14 -0.23 0.19 0.18 -0.15 -0.52 3.44477E-06 3.56574E-08 0.10582716 0.000501215 1.90395E-08 0.7125065 Yes IYBR071W YBR072W 2.628350613 -0.518034661 -0.076301477 0.027569305 0.290755246 0.004015505 -0.35985586 2.337595367 -0.03 0.16 0.36 0.25 -0.1 -0.14 -0.1 0.22 0.1 0.16 -0.18 -0.07 -0.03 -0.41 1.34276E-06 0.012308359 7.74831E-06 3.86047E-11 0.004847053 0.00029043 No IYGL249W YGL248W 3.498754813 0.892855572 1.214529342 1.028479755 1.162279587 1.222019515 1.225384911 2.273369902 -0.1 Missing 0.17 0.1 -0.26 0.08 -0.15 -0.03 0.05 -0.11 -0.13 0.11 0.2 -0.03 1.02564E-07 6.43929E-15 0.20129468 5.56975E-09 2.51165E-06 0.17721536 No IYCR088W YCR089W 3.076314876 0.804486455 -0.048484913 0.156672362 0.371546294 0.409542419 0.197050271 2.271828421 1.79 1.38 0.14 -0.49 -0.7 -0.3 -0.58 -0.23 -0.24 0.12 0.25 -0.15 -0.24 -0.32 9.4897E-08 8.36475E-10 0.53506017 0.001855238 0.07392684 0.71468077 Yes IYFR021W YFR022W 3.481792605 0.947939808 1.013141714 1.077470515 1.255527523 1.00676079 0.917878472 2.226265082 0.06 0.33 0.2 -0.24 -0.49 0.17 -0.2 0.01 0.01 0.39 -0.01 -0.14 -0.11 -0.2 3.12223E-06 0.004027472 0.16346347 0.13509644 0.36747543 0.021275824 No IYGL194C YGL194C 3.037471399 0.531337985 0.59702701 0.875666894 0.674858469 0.857701887 0.472181132 2.161804505 0.22 0 -0.24 Missing -0.12 Missing 0.12 0.3 -0.31 0.27 -0.48 0.16 -0.06 -0.08 4.66211E-06 2.52087E-12 0.75599107 0.001331064 0.004867877 0.9621531 No IYNL193W YNL192W 4.170268321 1.411201894 1.224767628 1.258925399 1.608300431 1.947585981 2.034496215 2.135772106 2.04 0.88 -0.03 -0.6 -0.36 -0.68 -0.53 -1.26 -1.3 0.62 1.38 0.93 0.37 -0.4 3.53156E-07 2.16738E-12 0.43480626 0.001118581 0.009334222 0.10350142 Yes IYPL150W YPL149W 2.687271333 0.511928324 0.415007446 0.481163174 0.445843394 0.669524943 0.725513276 1.961758057 0.67 -0.28 0.04 -0.3 0.25 0.42 0.37 -0.04 0.04 -0.36 -0.14 -0.28 -0.06 -0.44 9.31668E-08 1.73061E-08 0.63657283 0.056897285 0.26549743 0.70258326 No IYOR267C YOR267C 3.076870759 1.202949754 0.281350327 0.7330423 1.012201794 0.995813936 0.437499785 1.873921005 0.35 0.33 0.15 0.03 0.03 -0.01 -0.21 0.06 -0.01 -0.1 0.22 -0.08 -0.24 -0.17 4.56373E-06 0.002049144 0.83158506 0.34373647 0.53279231 0.75206247 No IYDR460W YDR461W 3.382643934 0.695084063 0.400177398 0.498954682 0.897501875 1.699820863 1.173190266 1.682823071 2.36 2.35 2.3 2.11 1.75 0.76 0.16 0.27 0.11 -1.02 -0.57 -1.53 -1.36 -1.59 1.39254E-05 0.046434302 2.68052E-12 0.014167647 0.05599616 5.77702E-05 No IYOL159C YOL159C 2.204169974 0.395667181 0.546893499 0.427574671 0.38616704 0.312318133 0.184541397 1.657276475 0.52 0.21 0.51 -0.07 0.3 Missing 0.25 -0.41 -0.23 -0.21 -0.28 -0.34 0.19 -0.34 1.9651E-05 1.20637E-06 0.43236521 0.31343455 0.23160316 0.32099114 Yes IYMR231W YMR232W 2.422701281 0.76564272 -0.345087916 0.495675289 -0.889630732 -0.40477575 -0.354933817 1.657058561 3.65 0.65 -0.04 -0.04 -0.26 -0.36 -0.35 -0.2 -0.38 -0.56 -0.35 -0.3 Missing -0.51 0.001189921 0 0.000376109 0.001345206 0.000682048 0.10743183 Yes IYJL128C-0 YJL128C 2.099136583 0.211271833 0.475425869 0.250108667 0.236118004 0.221305557 0.120485466 1.623710714 -0.16 0.08 0.16 0.17 0.17 0.03 0.18 -0.11 -0.19 0.05 -0.16 0.28 -0.1 -0.27 0.044010424 0.63907989 0.000280727 0.19438214 0.32020824 0.32706458 No IYJR153W-0 YJR154W 1.922233593 0.162235093 0.13319466 -0.348150895 0.315353452 0.324890992 -0.158087635 1.597342601 0.42 0.61 0.24 0.4 0.04 0.38 -0.13 -0.45 -0.19 0.17 -0.17 -0.22 0.32 Missing 0.011991445 0.55514037 0.20217442 0.31885483 Missing 0.48151267 Missing IYMR064W YMR065W 2.209943739 0.294271482 0.616805286 0.342264134 0.246053497 0.552787239 0.490119638 1.593138453 2.09 0.61 -0.21 -0.44 -0.13 -0.69 0.11 0.2 0.11 0.11 -0.21 -0.27 -0.39 -0.72 0.001296557 0.33622202 0.066398448 0.089846944 0.26456286 0.19629808 Yes IYGR141W YGR142W 2.686429809 0.979144036 1.102374741 0.886691909 1.112977866 1.004095323 1.076407381 1.573451943 0.25 -0.05 0.23 0.01 0.13 0.49 Missing 0.19 -0.08 -0.13 -0.09 -0.24 -0.36 -0.1 0.015150583 0.5813418 0.6507333 0.6199615 0.86282902 0.51933791 No IYFR054C-3 YFR054C 3.021469592 1.391509225 1.071725427 1.233942428 1.265784632 1.534466669 1.353297618 1.487002923 0.31 0.28 0.3 -0.23 0.31 0.07 0.1 0.2 0.07 -0.12 -0.23 -0.12 -0.07 -0.11 0.77054824 0.8438444 0.82862677 0.64544434 0.81028479 0.46920666 No IYJL165C YJL165C 2.400649151 0.925912076 0.728643936 0.464489204 0.205342491 0.317201342 0.858438758 1.474737075 0.37 0.19 -0.01 0.27 -0.18 0.13 -0.21 0.08 -0.11 -0.11 -0.03 0.03 -0.11 -0.11 0.36847543 0.35597472 0.47696379 0.41210014 0.47799888 0.65408299 No IYPR203W YPR204W 0.163072482 -1.552551417 -1.297302867 -1.227735668 -1.490958633 -1.329076732 -1.207888631 1.370961113 -0.37 -0.48 0.97 0.52 0.18 -0.11 -0.2 -0.53 -0.24 -0.04 0.4 0.62 0.27 -0.31 0.22856078 0.57060512 0.20231235 0.60587116 0.75653749 0.89257914 No IYCR009C YCR009C 2.326374221 0.974974286 0.89409755 0.803382193 0.735274935 0.474781873 0.805530997 1.351399935 1.53 1.01 0.93 0.07 -0.1 -0.42 -0.22 -0.34 -0.37 -0.03 -0.46 -0.22 -0.28 -0.53 0.50471903 0.14535559 0.63818179 0.21946016 0.38980166 0.88524905 Missing IYGL032C YGL032C 2.349234539 0.290961009 0.276409779 0.812761007 0.705294815 1.004591514 0.630663723 1.344643025 3.49 2.57 1.71 0.46 -1.22 -0.9 -1.39 -1.15 -0.92 -0.36 0.05 -0.02 0.06 -0.49 0.93348263 0.95122169 0.7021812 0.56014788 0.96712822 0.9360351 No IYMR164C YMR164C 2.360336319 1.053832641 0.399164342 0.377257396 0.637114142 0.508155964 0.461453831 1.306503678 0.49 0.27 -0.17 -0.04 -0.14 -0.15 -0.05 0.01 -0.28 0.31 0.09 0 -0.3 -0.04 0.63422934 0.93909288 0.85759339 0.78889162 0.91009827 0.62282239 Yes IYKL097W-A-0 YKL096W 2.022430489 0.298937204 0.729009365 0.637222439 0.140841512 0.176696578 0.472284065 1.293421124 -1.1 0.26 0.24 -0.26 0.03 0.7 1.6 0.72 -0.15 1.41 -2.07 -2.13 -0.78 -0.45 0.8563716 0.98101008 0.86846851 0.94986029 0.9885031 0.86433214 Missing ITL(UAA)K YKL189W 1.568160031 -0.208655313 -0.164180536 0.115714844 0.278664779 0.155428091 -0.17869378 1.289495252 1.89 0.2 0.03 -0.06 0.16 -0.42 -0.53 -0.08 0.04 -0.32 0.33 -0.13 -0.08 -0.37 0.7008921 0.968877 0.86512136 0.84985457 0.91430098 0.81626681 Yes IYNL078W YNL077W 1.994941186 0.741993217 0.236883453 0.057459964 0.487346313 0.369982138 -0.140790158 1.252947969 -0.15 0.28 0.91 0.48 0.41 -0.35 0.08 -0.14 0.02 -0.17 -0.14 0 -0.06 -0.35 0.64880508 0.51535646 0.46809238 0.20408454 0.67515365 0.65560986 No IYPR157W YPR158W 2.702110375 0.875891799 1.474615153 0.884647446 0.633739021 0.730077362 0.871570001 1.227495222 0.08 0.09 0.53 0.05 0.35 0.02 0.34 -0.15 0.07 -0.23 -0.09 -0.22 -0.06 -0.43 0.030279171 0.20624955 0.98568228 0.47330678 0.80306289 0.95110761 No IYNL209W YNL208W 2.223002796 0.439301142 0.530094901 0.695072352 0.532903106 0.733028756 1.045251581 1.177751215 1.17 0.89 1.09 1.16 0.53 0.53 0.71 -0.07 -0.08 -0.65 -0.5 -0.53 -0.43 -0.95 Missing Missing Missing Missing Missing Missing Yes IYFL066C YFL066C -0.185969189 -1.739393305 -2.010987169 -1.505568118 -1.360271297 -1.536117554 -1.483177658 1.174302108 -0.59 -0.11 0.72 0.92 -0.21 -0.01 -0.64 -0.53 -0.22 0.28 0.55 0.87 0.06 -0.24 0.15369362 0.48702965 0.91731635 0.001339413 0.038689427 0.30268764 No IYJL018W YJL017W 1.465615669 0.301618239 0.066334676 -0.545068383 -0.000846956 0.097949256 -0.110052955 1.16399743 -0.02 0.4 0.58 0.82 0.09 0.11 -0.36 -0.27 -0.45 0.16 -0.21 0.12 -0.04 -0.01 0.58512534 0.71857954 0.49255967 0.96264587 0.90388869 0.75236229 No IYJL171C YJL171C 2.785743274 1.631348692 1.055134685 0.971779683 1.475651281 0.990410683 1.164525896 1.154394582 0.19 -0.1 0.55 -0.14 0.27 0.01 0.57 0.15 0.11 -0.6 -0.3 -0.38 -0.23 -0.5 0.47744168 0.74931956 0.61393315 0.56285894 0.66945817 0.93237653 No IYMR160W YMR161W 1.744802508 0.262314059 0.185939553 0.487430445 0.49552839 0.592908409 0.415181247 1.151894099 -0.09 -0.16 0.17 0.04 0.29 -0.13 0.18 -0.13 -0.09 0.02 0.02 0.15 -0.04 Missing 0.014512727 0.07925309 0.96914823 0.89280377 0.51263967 0.95555606 No IYDR258C YDR258C 2.040001121 0.834945375 0.892429393 0.659722085 0.496769901 0.696525172 0.755563044 1.147571728 -0.27 0.8 0.63 0.15 -0.03 -0.03 -0.13 -0.25 -0.2 0.11 -0.16 -0.24 -0.24 -0.2 0.48581565 0.65843331 0.94516067 0.59391621 0.82980936 0.93926713 No IYMR237W YMR238W 2.075473502 0.572936258 0.759349749 0.964214648 0.87925266 0.62636834 0.68793418 1.111258854 0.38 0.05 0.29 0.3 0.2 0.06 0.29 -0.01 -0.02 -0.5 -0.21 -0.19 -0.05 -0.24 0.33920968 0.41632764 0.63629288 0.73306734 0.88059735 0.97949012 No IYKL038W YKL037W 0.464752773 -0.633072246 -0.683788833 -1.123044593 -1.141627019 -0.791613016 -1.220740981 1.097825019 0.04 0.76 0.13 -0.07 0.06 0.03 -0.05 -0.17 -0.05 0.1 0.12 -0.03 0.08 0.15 0.6564441 0.63078544 0.75780272 0.60142155 0.81888834 0.73925719 No IYOL033W YOL032W 2.020256839 0.610055182 0.86822087 0.925493598 0.723851796 0.683425736 0.854504408 1.094763241 0.1 0.13 0.19 -0.01 0 0.12 0.21 0.23 0.12 -0.18 0 -0.3 -0.16 -0.34 0.54353295 0.55862606 0.68666491 0.56671133 0.47066411 0.55317492 No IYKR060W YKR061W 2.842737115 1.402446191 1.218921525 1.460520667 1.767676342 1.184852011 1.517510145 1.075060773 1.33 0.72 -0.15 -0.61 -0.04 -0.27 0.03 -0.13 0.01 0.07 -0.27 -0.29 -0.11 -0.21 0.57675171 0.49485313 0.73067739 0.27253203 0.57627511 0.016570101 No IYNR009W YNR010W 1.963013038 0.667437163 0.897585529 0.810264505 0.82017608 0.511762957 0.488688079 1.065427509 0.13 0.04 -0.15 0.13 0.02 0.23 0.1 -0.03 -0.01 0.01 -0.39 0.42 -0.11 Missing 0.45277618 0.59006351 0.38261163 0.8415472 0.70350182 0.8326136 No IYGR122C-A YGR122C-A 2.126648627 0.496539906 0.608298216 0.677104287 0.81330175 0.731320969 1.079302521 1.047346106 Missing Missing Missing Missing Missing Missing Missing Missing Missing Missing Missing Missing Missing Missing 0.471463 0.58541212 0.91304927 0.54150358 0.55548387 0.85379237 No IYNL054W YNL053W 2.815158906 1.272159677 1.652187782 1.560474582 1.771983843 1.144600533 1.0245948 1.043175063 0.79 0.09 0.1 -0.19 -0.41 0.17 0.06 0.24 0.02 -0.24 -0.49 -0.17 -0.09 -0.04 0.14645472 0.25483178 0.12480179 0.33378381 0.13710778 0.17514708 No IYKL104C YKL104C 3.402840567 2.363973012 1.722438478 2.116413046 1.904090764 1.638180501 1.635205955 1.038867555 1.22 0.84 0.8 0.15 -0.16 -0.58 -0.28 -0.17 -0.1 0.08 -0.09 0.17 -0.28 -0.67 0.78979216 0.74159865 0.93456557 0.70339943 0.51678625 0.85415445 No IYDR076W YDR077W 5.265430682 4.177680146 3.276134102 3.916150682 4.246810056 3.816474044 2.889361979 1.018620626 -0.02 0.06 0.38 0.33 0.01 -0.4 -0.64 -0.05 0.5 0.02 0.81 0.08 -0.13 -0.46 0.39748426 0.7361369 0.67646503 0.37924549 0.68254898 0.76457255 No IYOR130C YOR130C 1.514901111 0.350572982 0.499243697 0.484830457 0.159666539 0.378483106 0.271569002 1.015657414 1.03 0.68 0.75 0.38 0.11 -0.23 -0.02 -0.4 -0.16 -0.47 -0.33 -0.29 -0.13 -0.54 0.85339115 0.48653406 0.36207003 0.6410681 0.55934234 0.98479017 Yes IYLR102C YLR102C 1.616234741 0.602233243 0.308416629 0.439693135 0.047187335 0.427576154 0.500814411 1.014001498 0 Missing 0.05 -0.43 -0.43 0.13 0.02 0.09 0.2 0.4 -0.08 0 0.25 -0.24 0.012209705 0.36348852 0.79401051 0.69278484 0.58139421 0.60453333 Yes IYER102W YER103W 1.61457334 0.236504982 0.372169327 0.609662503 0.092497839 0.42305398 0.381125209 1.004910837 0.19 -0.14 0.11 0.31 0.37 0.21 0.38 -0.03 0.11 0 -0.2 -0.14 -0.22 -0.29 0.69475642 0.32502971 0.22428871 0.12462831 0.10565368 0.022651526 No IYHL008C YHL008C 1.559095707 0.120252766 0.323949816 0.264057653 0.558745505 0.498226505 0.49724283 1.000350202 0.07 -0.11 0.35 0.05 -0.19 0.02 -0.14 0.27 0.14 -0.11 0.24 -0.06 -0.09 -0.3 0.50675744 0.52689892 0.30428012 0.32840402 0.52424658 0.065174133 No